Bioinformatics
Bioinformatics
Bioinformatics in nanopore research covers the computational steps that transform raw nanopore signals and reads into interpretable biological or technical results.
Key tasks
- Basecalling raw signal into sequence reads.
- Quality control and read filtering.
- Read mapping to reference genomes.
- De novo genome assembly.
- Variant calling and structural variant analysis.
- Taxonomic classification for metagenomics and pathogen detection.
- Methylation and other modification analysis.
Notes for this wiki
Bioinformatics pages should include tool names, input and output formats, assumptions, common failure modes, and links to reproducible workflows when available.